PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004080-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 124aa    MW: 14080.6 Da    PI: 9.5746
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004080-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.8e-081559244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT+   +++ +a +++ ++   +W  +ar +  g++++++k ++
  AHYPO_004080-RA 15 SSWTAKQNKQFERALALYDKEtkdRWQNVARLVD-GKSAEDVKRHY 59
                     58*****************99*************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.528963IPR017877Myb-like domain
SMARTSM007176.8E-71365IPR001005SANT/Myb domain
PfamPF002493.9E-61559IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-51669IPR009057Homeodomain-like
SuperFamilySSF466893.21E-121670IPR009057Homeodomain-like
CDDcd001675.20E-61763No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MASNSISSSR NISTSSWTAK QNKQFERALA LYDKETKDRW QNVARLVDGK SAEDVKRHYE  60
ILLEDLNRIE AGRVPFPNYR QPAGNALNFN DEQRSAGTRE PTSMTRKADR EILESFGSFP  120
WAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-31694186RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690864.16e-46PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1738e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0J8BK387e-46A0A0J8BK38_BETVU; Uncharacterized protein
STRINGPOPTR_0005s12390.14e-36(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-32RAD-like 1